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Tell Mom Thanks...I just may do it...
My Mom: "Ok, let me think... when the car won't start your supposed to... take off your shoe and hit the battery with it". Worked every time. 
Ok, I'll check it. Also, I ordered an ignition switch just in case. If not today, I'm sure I'll need it at some point.
Dave
There have been postings here over the years of people with running or no run problems that have been traced to the P.C. If it won't turn over, that might be something else...The clutch switch connector seems to catch people now and then...The P.C. shouldn't have any effect on that....but now I'm thinking about the side stand interlock switch......
Troll - How so?
John - I'll test that out in the AM and see whats happening.
Thx,
Dave
Ok so you have voltage to all the fuses That means the white and red leads at the ignition switch are connecting that just leaves the supply to the ICU to check..If everything is as you say you should be able to link the starter relay contacts to turn the engine over..If the voltage from the ignition switch goes to the connecter to the ICU then check the connector for a dirty contact, examine the ICU circuit connector for a hairline crack, you can bridge these with a single strand of thin copper wire and solder.
John.
You have a power commander installed...I forgot that. Now I would be suspicious of that causing the no start...it's happened before.
I used a test probe to test the fuses and voltage.
Just a quick question..
I've looked at the circuit diagram for your bike and it looks as if you have it switched to Park instead of on at the ignition switch..
If so I think you should only have voltage to fuses 5 & 6...Did you check the fuses for voltage with the switch on or did you remove them and only check for resistance..
John.
Research shows '99s seemed to have a high rate of ign. switch failure......
Sounds like it's in the key switch, jiggle the keys.
Thanks for the comments guys, neutral, kill switch, and the 15 A fuse are all good. I did check that fuse first after having read prior issues with that.
I just have no power in anything other than the running (tail) lights, signals, and horn. I'm probably going to have to copy the drawing and probe the lines.
Dave
I suppose you could also try rolling it to make sure you haven't left it in gear..
John.
Check the red kill switch on the right handlebar; maybe it isn't working properly.....I've bumped mine getting off after a ride and had to scratch my head for a minute or 2 when going to start it the next time. 
Have you checked the 15a fuel injection fuse by the battery.
John.
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